Semantic segmentation for feature detection in ocean bottom seismometer data

Authors

DOI:

https://doi.org/10.26443/seismica.v5i1.1821

Keywords:

ocean bottom seismometer, machine learning, data processing, whales

Abstract

We curate a small, manually annotated dataset of 500 spectrograms containing a range of feature classes in the 1 to 50 Hz frequency band from a single ocean bottom seismometer (OBS) from the UPFLOW array in the mid-Atlantic region. We explore several machine learning (ML) training techniques that are specialised for low-data training regimes, and compare their performances for two feature classes (instrument resonances and blue whale calls). We find that a synthetic pre-training step significantly improves performance relative to semi-supervised approaches and finetuning an off-the-shelf model, with a ~5% improvement in performance for well-represented features, and an enhancement of over 90% for rare features. Despite the small dataset, our method can be utilised to accurately and efficiently segment spectrogram data across 43 OBSs with high-quality data of the large-scale UPFLOW array, as well as for earlier OBS deployments. We next investigate a range of applications for the trained segmentation models. We demonstrate that our ML algorithm identifies current-induced instrument resonances accurately enough to extract a tidal signal. In addition, it reliably detects blue whale calls across the entire UPFLOW array, and it even enables automated tracking of individual whales detected simultaneously at multiple OBSs.

References

Ahn, J., & Kwak, S. (2018). Learning pixel-level semantic affinity with image-level supervision for weakly supervised semantic segmentation. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 4981–4990.

Akamatsu, T., Rasmussen, M. H., & Iversen, M. (2014). Acoustically invisible feeding blue whales in Northern Icelandic waters. The Journal of the Acoustical Society of America, 136(2), 939–944. https://doi.org/10.1121/1.4887439

Allen, A. N., Harvey, M., Harrell, L., Jansen, A., Merkens, K. P., Wall, C. C., Cattiau, J., & Oleson, E. M. (2021). A convolutional neural network for automated detection of humpback whale song in a diverse, long-term passive acoustic dataset. Frontiers in Marine Science, 8, 607321. https://doi.org/10.3389/fmars.2021.607321

An, C., Cai, C., Zhou, L., & Yang, T. (2022). Characteristics of low-frequency horizontal noise of ocean-bottom seismic data. Seismological Society of America, 93(1), 257–267. https://doi.org/10.1785/0220200349

Anthony, R. E., Aster, R. C., Wiens, D., Nyblade, A., Anandakrishnan, S., Huerta, A., Winberry, J. P., Wilson, T., & Rowe, C. (2014). The seismic noise environment of Antarctica. Seismological Research Letters, 86(LA-UR-14-28568). https://doi.org/10.1785/0220140109

Aster, R. C., McNamara, D. E., & Bromirski, P. D. (2008). Multidecadal climate-induced variability in microseisms. Seismological Research Letters, 79(2), 194–202. https://doi.org/10.1785/gssrl.79.2.194

Badrinarayanan, V., Kendall, A., & Cipolla, R. (2017). Segnet: A deep convolutional encoder-decoder architecture for image segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(12), 2481–2495. https://doi.org/10.1109/TPAMI.2016.2644615

Bailey, L. P., Clare, M. A., Hunt, J. E., Kane, I. A., Miramontes, E., Fonnesu, M., Argiolas, R., Malgesini, G., & Wallerand, R. (2024). Highly variable deep-sea currents over tidal and seasonal timescales. Nature Geoscience. https://doi.org/10.1038/s41561-024-01494-2

Barruol, G., Davy, C., Fontaine, F. R., Schlindwein, V., & Sigloch, K. (2015). Monitoring austral and cyclonic swells in the ”Iles Eparses”(Mozambique channel) from microseismic noise. Acta Oecologica, 72, 120–128. https://doi.org/10.1016/j.actao.2015.10.015

Barruol, G., Sigloch, K., RHUM-RUM Group, & RESIF. (2017). RHUM-RUM experiment, 2011-2015, code YV (Réunion Hotspot and Upper Mantle – Réunion’s Unterer Mantel) funded by ANR, DFG, CNRS-INSU, IPEV, TAAF, instrumented by DEPAS, INSU-OBS, AWI and the Universities of Muenster, Bonn, La Réunion. RESIF - Réseau Sismologique et géodésique Français. https://doi.org/10.15778/RESIF.YV2011

Batsi, E., Tsang-Hin-Sun, E., Klingelhoefer, F., Bayrakci, G., Chang, E. T., Lin, J.-Y., Dellong, D., Monteil, C., & Géli, L. (2019). Nonseismic signals in the ocean: Indicators of deep sea and seafloor processes on ocean-bottom seismometer data. Geochemistry, Geophysics, Geosystems, 20(8), 3882–3900. https://doi.org/10.1029/2019GC008349

Baumgartner, M. F., & Mussoline, S. E. (2011). A generalized baleen whale call detection and classification system. The Journal of the Acoustical Society of America, 129(5), 2889–2902. https://doi.org/10.1121/1.3562166

Bell, S. W., Forsyth, D. W., & Ruan, Y. (2015). Removing noise from the vertical component records of ocean-bottom seismometers: Results from year one of the Cascadia Initiative. Bulletin of the Seismological Society of America, 105(1), 300–313. https://doi.org/10.1785/0120140054

Bergler, C., Schröter, H., Cheng, R. X., Barth, V., Weber, M., Nöth, E., Hofer, H., & Maier, A. (2019). ORCA-SPOT: An automatic killer whale sound detection toolkit using deep learning. Scientific Reports, 9(1), 10997. https://doi.org/10.1038/s41598-019-47335-w

Bornstein, T., Lange, D., Münchmeyer, J., Woollam, J., Rietbrock, A., Barcheck, G., Grevemeyer, I., & Tilmann, F. (2024). PickBlue: Seismic phase picking for ocean bottom seismometers with deep learning. Earth and Space Science, 11(1), e2023EA003332. https://doi.org/10.1029/2023EA003332

Brodie, D. C., & Dunn, R. A. (2015). Low frequency baleen whale calls detected on ocean-bottom seismometers in the Lau basin, southwest Pacific Ocean. The Journal of the Acoustical Society of America, 137(1), 53–62. https://doi.org/10.1121/1.4904556

Bromirski, P. D., Duennebier, F. K., & Stephen, R. A. (2005). Mid-ocean microseisms. Geochemistry, Geophysics, Geosystems, 6(4). https://doi.org/10.1029/2004GC000768

Chen, L.-C., Zhu, Y., Papandreou, G., Schroff, F., & Adam, H. (2018). Encoder-decoder with Atrous Separable Convolution for Semantic Image Segmentation. Proceedings of the European Conference on Computer Vision (ECCV), 801–818.

Chen, Y., Ji, D., Ma, Q., Zhai, C., & Ma, Y. (2024). A Novel Generative Adversarial Network for the Removal of Noise and Baseline Drift in Seismic Signals. IEEE Transactions on Geoscience and Remote Sensing, 62, 1–14. https://doi.org/10.1109/TGRS.2024.3358901

Choi, S., Lee, B., Kim, J., & Jung, H. (2024). Deep-learning-based seismic-signal p-wave first-arrival picking detection using spectrogram images. Electronics, 13(1), 229. https://doi.org/10.3390/electronics13010229

Copernicus Marine Service. (2024). Atlantic-Iberian Biscay Irish-Ocean Physics Reanalysis. Copernicus Marine Service. https://doi.org/10.48670/moi-00029

Corela, C. (2014). Ocean bottom seismic noise : applications for the crust knowledge, interaction ocean-atmosphere and instrumental behaviour [PhD Thesis, Faculdade de Ciências da Universidade de Lisboa]. http://hdl.handle.net/10451/15805

Corela, C., Loureiro, A., Duarte, J. L., Matias, L., Rebelo, T., & Bartolomeu, T. (2023). The effect of deep ocean currents on ocean-bottom seismometers records. Natural Hazards and Earth System Sciences, 23(4), 1433–1451. https://doi.org/10.5194/nhess-23-1433-2023

Cotillard, T., Sécheresse, X., Aubin, J., Mikus, M.-A., Vergara, V., Gambs, S., Michaud, R., Martins, C. C., Turgeon, S., Chion, C., & others. (2024). Automatic detection and classification of beluga whale calls in the St. Lawrence estuary. The Journal of the Acoustical Society of America, 156(6), 3723–3740. https://doi.org/10.1121/10.0030472

Crawford, W. C., & Webb, S. C. (2000). Identifying and Removing Tilt Noise from Low-Frequency (<0.1 Hz) Seafloor Vertical Seismic Data. Bulletin of the Seismological Society of America, 90(4), 952–963. https://doi.org/10.1785/0119990121

Crawford, W. C., Webb, S. C., & Hildebrand, J. A. (1991). Seafloor compliance observed by long-period pressure and displacement measurements. Journal of Geophysical Research: Solid Earth, 96(B10), 16151–16160. https://doi.org/10.1029/91jb01577

Dahmen, N. L., Clinton, J. F., Meier, M.-A., Stähler, S. C., Ceylan, S., Kim, D., Stott, A. E., & Giardini, D. (2022). MarsQuakeNet: A more complete marsquake catalog obtained by deep learning techniques. Journal of Geophysical Research: Planets, 127(11), e2022JE007503. https://doi.org/10.1029/2022JE007503

Davy, C., Barruol, G., Fontaine, F. R., Sigloch, K., & Stutzmann, E. (2014). Tracking major storms from microseismic and hydroacoustic observations on the seafloor. Geophysical Research Letters, 41(24), 8825–8831. https://doi.org/10.1002/2014GL062319

De Castro, F. R., Harris, D. V., Buchan, S. J., Balcazar, N., & Miller, B. S. (2024). Beyond counting calls: estimating detection probability for Antarctic blue whales reveals biological trends in seasonal calling. Frontiers in Marine Science, Volume 11, 1406678. https://doi.org/10.3389/fmars.2024.1406678

Deng, J., Dong, W., Socher, R., Li, L.-J., Li, K., & Fei-Fei, L. (2009). Imagenet: A large-scale hierarchical image database. 2009 IEEE Conference on Computer Vision and Pattern Recognition, 248–255. https://doi.org/10.1109/CVPR.2009.5206848

Dieleman, S., & Schrauwen, B. (2014). End-to-end learning for music audio. 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 6964–6968. https://doi.org/10.1109/ICASSP.2014.6854950

Dosovitskiy, A., Beyer, L., Kolesnikov, A., Weissenborn, D., Zhai, X., Unterthiner, T., Dehghani, M., Minderer, M., Heigold, G., Gelly, S., Uszkoreit, J., & Houlsby, N. (2021). An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale. 9th International Conference on Learning Representations, ICLR 2021, Virtual Event, Austria, May 3-7, 2021. https://openreview.net/forum?id=YicbFdNTTy

Dréo, R., Bouffaut, L., Leroy, E., Barruol, G., & Samaran, F. (2019). Baleen whale distribution and seasonal occurrence revealed by an ocean bottom seismometer network in the Western Indian Ocean. Deep Sea Research Part II: Topical Studies in Oceanography, 161, 132–144. https://doi.org/10.1016/j.dsr2.2018.04.005

Duennebier, F. K., Blackinton, G., & Sutton, G. H. (1981). Current-generated noise recorded on ocean bottom seismometers. Marine Geophysical Researches, 5(1), 109–115. https://doi.org/10.1007/bf00310316

Dunn, R. A., & Hernandez, O. (2009). Tracking blue whales in the eastern tropical Pacific with an ocean-bottom seismometer and hydrophone array. The Journal of the Acoustical Society of America, 126(3), 1084–1094. https://doi.org/10.1121/1.3158929

Essing, D., Schlindwein, V., Schmidt-Aursch, M. C., Hadziioannou, C., & Stähler, S. C. (2021). Characteristics of Current-Induced Harmonic Tremor Signals in Ocean-Bottom Seismometer Records. Seismological Research Letters. https://doi.org/10.1785/0220200397

Fan, Y., Kukleva, A., Dai, D., & Schiele, B. (2023). Revisiting consistency regularization for semi-supervised learning. International Journal of Computer Vision, 131(3), 626–643. https://doi.org/10.1007/s11263-022-01723-4

Fernandez, M., Alves, F., Ferreira, R., Fischer, J.-C., Thake, P., Nunes, N., Caldeira, R., & Dinis, A. (2021). Modeling fine-scale cetaceans’ distributions in oceanic islands: Madeira Archipelago as a case study. Frontiers in Marine Science, 8, 688248. https://doi.org/10.3389/fmars.2021.688248

Ferreira, A. M. G. (2024). Upward mantle flow from novel seismic observations (UPFLOW). GFZ Data Services. Freitas, L., Dinis, A., Nicolau, C., Ribeiro, C., & Alves, F. (2012). New records of cetacean species for Madeira Archipelago with an updated checklist. Boletim Do Museu Municipal Do Funchal (História Natural), 334(LXII), 25–43.

Gaspà Rebull, O., Cusı́, J. D., Ruiz Fernández, M., & Muset, J. G. (2006). Tracking fin whale calls offshore the Galicia Margin, north east Atlantic Ocean. The Journal of the Acoustical Society of America, 120(4), 2077–2085. https://doi.org/10.1121/1.2336751

Gillespie, D., Caillat, M., Gordon, J., & White, P. (2013). Automatic detection and classification of odontocete whistles. The Journal of the Acoustical Society of America, 134(3), 2427–2437. https://doi.org/10.1121/1.4816555

Godin, O. A., Tan, T. W., Joseph, J. E., & Walters, M. W. (2024). Observation of exceptionally strong near-bottom flows over the Atlantis II Seamounts in the northwest Atlantic. Scientific Reports, 14(1), 10308. https://doi.org/10.1038/s41598-024-60528-2

Goodwin, M., Halvorsen, K. T., Jiao, L., Knausgaard, K. M., Martin, A. H., Moyano, M., Oomen, R. A., Rasmussen, J. H., Sørdalen, T. K., & Thorbjørnsen, S. H. (2022). Unlocking the potential of deep learning for marine ecology: overview, applications, and outlook. ICES Journal of Marine Science, 79(2), 319–336. https://doi.org/10.1093/icesjms/fsab255

Griffin, O. M. (1985). Vortex-induced vibrations of marine cables and structures. Naval Research Laboratory.

Gualtieri, L., Camargo, S. J., Pascale, S., Pons, F. M., & Ekström, G. (2018). The persistent signature of tropical cyclones in ambient seismic noise. Earth and Planetary Science Letters, 484, 287–294. https://doi.org/10.1016/j.epsl.2017.12.026

Harris, D., Matias, L., Thomas, L., Harwood, J., & Geissler, W. H. (2013). Applying distance sampling to fin whale calls recorded by single seismic instruments in the northeast Atlantic. The Journal of the Acoustical Society of America, 134(5), 3522–3535. https://doi.org/10.1121/1.4821207

He, K., Gkioxari, G., Dollár, P., & Girshick, R. (2017). Mask r-cnn. Proceedings of the IEEE International Conference on Computer Vision, 2961–2969. He, K., Zhang, X., Ren, S., & Sun, J. (2016). Deep residual learning for image recognition. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 770–778.

Hilmo, R., & Wilcock, W. S. D. (2024). Estimating distances to baleen whales using multipath arrivals recorded by individual seafloor seismometers at full ocean depth. The Journal of the Acoustical Society of America, 155(2), 930–951. https://doi.org/10.1121/10.0024615

Hoffmann, J., Bar-Sinai, Y., Lee, L. M., Andrejevic, J., Mishra, S., Rubinstein, S. M., & Rycroft, C. H. (2019). Machine learning in a data-limited regime: Augmenting experiments with synthetic data uncovers order in crumpled sheets. Science Advances, 5(4), eaau6792. https://doi.org/10.1126/sciadv.aau6792

Hu, E. J., Shen, Y., Wallis, P., Allen-Zhu, Z., Li, Y., Wang, S., Wang, L., Chen, W., & others. (2022). Lora: Low-rank adaptation of large language models. ICLR, 1(2), 3. Iakubovskii, P. (2019). Segmentation Models Pytorch. In GitHub repository. GitHub. https://github.com/qubvel/segmentation_models.pytorch

Jain, S., Seth, G., Paruthi, A., Soni, U., & Kumar, G. (2022). Synthetic data augmentation for surface defect detection and classification using deep learning. Journal of Intelligent Manufacturing, 1–14. https://doi.org/10.1007/s10845-020-01710-x

Jansson, A., Humphrey, E., Montecchio, N., Bittner, R., Kumar, A., & Weyde, T. (2017). Singing voice separation with deep U-Net convolutional networks. 18th International Society for Music Information Retrieval Conference, 23–27.

Japkowicz, N., & Stephen, S. (2002). The class imbalance problem: A systematic study. Intelligent Data Analysis, 6(5), 429–449. https://doi.org/10.3233/IDA-2002-650

Jiang, C., Fang, L., Fan, L., & Li, B. (2021). Comparison of the earthquake detection abilities of PhaseNet and EQTransformer with the Yangbi and Maduo earthquakes. Earthquake Science, 34(5), 425–435. https://doi.org/10.29382/eqs-2021-0038

Jin, C., Kim, M., Jang, S., & Paeng, D.-G. (2022). Semantic segmentation-based whistle extraction of Indo-Pacific Bottlenose Dolphin residing at the coast of Jeju island. Ecological Indicators, 137, 108792. https://doi.org/10.1016/j.ecolind.2022.108792

Kedar, S., Longuet-Higgins, M., Webb, F., Graham, N., Clayton, R., & Jones, C. (2008). The origin of deep ocean microseisms in the North Atlantic Ocean. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 464(2091), 777–793. https://doi.org/10.1098/rspa.2007.0277

Koper, K. D., & Burlacu, R. (2015). The fine structure of double-frequency microseisms recorded by seismometers in North America. Journal of Geophysical Research: Solid Earth, 120(3), 1677–1691. https://doi.org/10.1002/2014JB011820

Koper, K. D., Burlacu, R., Armstrong, A. D., & Herrmann, R. B. (2024). Classifying small earthquakes, explosions and collapses in the western United States using physics-based features and machine learning. Geophysical Journal International, 239(2), 1257–1270. https://doi.org/10.1093/gji/ggae316

Kornblith, S., Shlens, J., & Le, Q. V. (2019). Do better imagenet models transfer better? Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2661–2671.

Krogh, A., & Hertz, J. (1991). A simple weight decay can improve generalization. Advances in Neural Information Processing Systems, 4. Kuna, V. M., & Nábělek, J. L. (2021). Seismic crustal imaging using fin whale songs. Science, 371(6530), 731–735. https://doi.org/10.1126/science.abf3962

Laine, S., & Aila, T. (2017). Temporal Ensembling for Semi-Supervised Learning. International Conference on Learning Representations. https://openreview.net/forum?id=BJ6oOfqge LA/P/068/2020. (2020). https://doi.org/10.54499/LA/P/0068/2020

Lapins, S., Goitom, B., Kendall, J.-M., Werner, M. J., Cashman, K. V., & Hammond, J. O. (2021). A little data goes a long way: Automating seismic phase arrival picking at Nabro volcano with transfer learning. Journal of Geophysical Research: Solid Earth, 126(7), e2021JB021910. https://doi.org/10.1029/2021JB021910

Lewis, B. T. R., & Tuthill, J. D. (1981). Instrumental waveform distortion on ocean bottom seismometers. Marine Geophysical Researches, 5(1), 79–85. https://doi.org/10.1007/bf00310313

Liu, Z., Mao, H., Wu, C.-Y., Feichtenhofer, C., Darrell, T., & Xie, S. (2022). A convnet for the 2020s. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 11976–11986. Lockyer, C. (1984). Review of baleen whale (Mysticeti) reproduction and implications for management. Reports of the International Whaling Commission, 6, 27–50.

Lomax, A., Virieux, J., Volant, P., & Berge-Thierry, C. (2000). Probabilistic earthquake location in 3D and layered models: Introduction of a Metropolis-Gibbs method and comparison with linear locations. Advances in Seismic Event Location, 101–134. https://doi.org/10.1007/978-94-015-9536-0_5

Marques, T. A., Thomas, L., Martin, S. W., Mellinger, D. K., Ward, J. A., Moretti, D. J., Harris, D., & Tyack, P. L. (2013). Estimating animal population density using passive acoustics. Biological Reviews, 88(2), 287–309. https://doi.org/10.1111/brv.12001

Mashayek, A., Gula, J., Baker, L. E., Naveira Garabato, A. C., Cimoli, L., Riley, J. J., & de Lavergne, C. (2024). On the role of seamounts in upwelling deep-ocean waters through turbulent mixing. Proceedings of the National Academy of Sciences, 121(27). https://doi.org/10.1073/pnas.2322163121

Matias, L., & Harris, D. (2015). A single-station method for the detection, classification and location of fin whale calls using ocean-bottom seismic stations. The Journal of the Acoustical Society of America, 138(1), 504–520. https://doi.org/10.1121/1.4922706

McDonald, M. A., Hildebrand, J. A., & Webb, S. C. (1995). Blue and fin whales observed on a seafloor array in the Northeast Pacific. The Journal of the Acoustical Society of America, 98(2), 712–721. https://doi.org/10.1121/1.413565

Miller, B. S., Calderan, S., Leaper, R., Miller, E. J., Širović, A., Stafford, K. M., Bell, E., & Double, M. C. (2021). Source level of Antarctic blue and fin whale sounds recorded on sonobuoys deployed in the deep-ocean off Antarctica. Frontiers in Marine Science, 8, 792651. https://doi.org/10.3389/fmars.2021.792651

Miller, B. S., Madhusudhana, S., Aulich, M. G., & Kelly, N. (2023). Deep learning algorithm outperforms experienced human observer at detection of blue whale D-calls: a double-observer analysis. Remote Sensing in Ecology and Conservation, 9(1), 104–116. https://doi.org/10.1002/rse2.297

Miller, B. S., Širović Ana 13 Buchan Susannah 14 Findlay Ken 7 15, I.-S. A. T. W. G. M. B. S. 1 S. K. M. 9 V. O. I. 10 H. D. 11 S. F. 12, Balcazar, N., Nieukirk, S., Leroy, E. C., Aulich, M., Shabangu, F. W., Dziak, R. P., Lee, W. S., & Hong, J. K. (2021). An open access dataset for developing automated detectors of Antarctic baleen whale sounds and performance evaluation of two commonly used detectors. Scientific Reports, 11(1), 806. https://doi.org/10.1038/s41598-020-78995-8

Minaee, S., Boykov, Y., Porikli, F., Plaza, A., Kehtarnavaz, N., & Terzopoulos, D. (2021). Image segmentation using deep learning: A survey. IEEE Transactions on Pattern Analysis and Machine Intelligence, 44(7), 3523–3542. https://doi.org/10.1109/TPAMI.2021.3059968

Mishra, S., Panda, R., Phoo, C. P., Chen, C.-F. R., Karlinsky, L., Saenko, K., Saligrama, V., & Feris, R. S. (2022). Task2sim: Towards effective pre-training and transfer from synthetic data. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 9194–9204.

Mousavi, S. M., & Beroza, G. C. (2022). Deep-learning seismology. Science, 377(6607), eabm4470. https://doi.org/10.1126/science.abm4470 Mousavi, S. M., & Beroza, G. C. (2023). Machine learning in earthquake seismology. Annual Review of Earth and Planetary Sciences, 51(1), 105–129. https://doi.org/10.1146/annurev-earth-071822-100323

Mousavi, S. M., Ellsworth, W. L., Zhu, W., Chuang, L. Y., & Beroza, G. C. (2020). Earthquake transformer—an attentive deep-learning model for simultaneous earthquake detection and phase picking. Nature Communications, 11(1), 3952. https://doi.org/10.1038/s41467-020-17591-w

Mousavi, S. M., & Langston, C. A. (2017). Automatic noise-removal/signal-removal based on general cross-validation thresholding in synchrosqueezed domain and its application on earthquake data. Geophysics, 82(4), V211–V227. https://doi.org/10.1190/geo2016-0433.1

Mousavi, S. M., Sheng, Y., Zhu, W., & Beroza, G. C. (2019). STanford EArthquake Dataset (STEAD): A global data set of seismic signals for AI. IEEE Access, 7, 179464–179476. https://doi.org/10.1109/ACCESS.2019.2947848

Mousavi, S. M., Zhu, W., Sheng, Y., & Beroza, G. C. (2019). CRED: A deep residual network of convolutional and recurrent units for earthquake signal detection. Scientific Reports, 9(1), 10267. https://doi.org/10.1038/s41598-019-45748-1

Münchmeyer, J., Woollam, J., Rietbrock, A., Tilmann, F., Lange, D., Bornstein, T., Diehl, T., Giunchi, C., Haslinger, F., Jozinović, D., & others. (2022). Which picker fits my data? A quantitative evaluation of deep learning based seismic pickers. Journal of Geophysical Research: Solid Earth, 127(1), e2021JB023499. https://doi.org/10.1029/2021JB023499

Nakano, M., Sugiyama, D., Hori, T., Kuwatani, T., & Tsuboi, S. (2019). Discrimination of seismic signals from earthquakes and tectonic tremor by applying a convolutional neural network to running spectral images. Seismological Research Letters, 90(2A), 530–538. https://doi.org/10.1785/0220180279

Napoli, A., & White, P. R. (2023). Unsupervised domain adaptation for the cross-dataset detection of humpback whale calls. Detection and Classification of Acoustic Scenes and Events.

Negi, S. S., Kumar, A., Ningthoujam, L. S., & Pandey, D. K. (2021). An Efficient Approach of Data Adaptive Polarization Filter to Extract Teleseismic Phases from the Ocean-Bottom Seismograms. Seismological Society of America, 92(1), 528–542. https://doi.org/10.1785/0220200034

Nettles, M., & Ekström, G. (2010). Glacial earthquakes in Greenland and Antarctica. Annual Review of Earth and Planetary Sciences, 38, 467–491. https://doi.org/10.1146/annurev-earth-040809-152414

Niksejel, A., & Zhang, M. (2024). OBSTransformer: a deep-learning seismic phase picker for OBS data using automated labelling and transfer learning. Geophysical Journal International, 237(1), 485–505. https://doi.org/10.1093/gji/ggae049

O’Neel, S., Marshall, H. P., McNamara, D. E., & Pfeffer, W. T. (2007). Seismic detection and analysis of icequakes at Columbia Glacier, Alaska. Journal of Geophysical Research: Earth Surface, 112(F3). https://doi.org/10.1029/2006JF000595

Pakhomov, A., & Goldburt, T. (2006). Seismic systems for unconventional target detection and identification. Sensors, and Command, Control, Communications, and Intelligence (C3I) Technologies for Homeland Security and Homeland Defense V, 6201, 466–477. https://doi.org/10.1117/12.668930

Peláez-Vegas, A., Mesejo, P., & Luengo, J. (2023). A survey on semi-supervised semantic segmentation. ArXiv Preprint ArXiv:2302.09899. https://doi.org/10.48550/arXiv.2302.09899

Peng, L., Li, L., Mousavi, S. M., Zeng, X., & Beroza, G. C. (2025). TwoStream-EQT: A microseismic phase picking model combining time and frequency domain inputs. Computers & Geosciences, 105991. https://doi.org/10.1016/j.cageo.2025.105991

Pereira, A., Harris, D., Tyack, P., & Matias, L. (2020). On the use of the Lloyd’s Mirror effect to infer the depth of vocalizing fin whales. The Journal of the Acoustical Society of America, 148(5), 3086–3101. https://doi.org/10.1121/10.0002426

Piczak, K. J. (2015). Environmental sound classification with convolutional neural networks. 2015 IEEE 25th International Workshop on Machine Learning for Signal Processing (MLSP), 1–6. https://doi.org/10.1109/MLSP.2015.7324337

Plourde, A. P., & Nedimović, M. R. (2022). Monitoring fin and blue whales in the lower St. Lawrence Seaway with onshore seismometers. Remote Sensing in Ecology and Conservation, 8(4), 551–563. https://doi.org/10.1002/rse2.261

Rasmussen, J. H., & Širović, A. (2021). Automatic detection and classification of baleen whale social calls using convolutional neural networks. The Journal of the Acoustical Society of America, 149(5), 3635–3644. https://doi.org/10.1121/10.0005047

Redmon, J., Divvala, S., Girshick, R., & Farhadi, A. (2016). You only look once: Unified, real-time object detection. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 779–788.

Roch, M. A., Scott Brandes, T., Patel, B., Barkley, Y., Baumann-Pickering, S., & Soldevilla, M. S. (2011). Automated extraction of odontocete whistle contours. The Journal of the Acoustical Society of America, 130(4), 2212–2223. https://doi.org/10.1121/1.3624821

Romagosa, M., Baumgartner, M., Cascão, I., Lammers, M. O., Marques, T. A., Santos, R. S., & Silva, M. A. (2020). Baleen whale acoustic presence and behaviour at a Mid-Atlantic migratory habitat, the Azores Archipelago. Scientific Reports, 10(1), 4766. https://doi.org/10.1038/s41598-020-61849-8

Ronneberger, O., Fischer, P., & Brox, T. (2015). U-net: Convolutional networks for biomedical image segmentation. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part III 18, 234–241. https://doi.org/10.1007/978-3-319-24574-4_28

Saad, O. M., Huang, G., Chen, Y., Savvaidis, A., Fomel, S., Pham, N., & Chen, Y. (2021). Scalodeep: A highly generalized deep learning framework for real-time earthquake detection. Journal of Geophysical Research: Solid Earth, 126(4), e2020JB021473. https://doi.org/10.1029/2020JB021473

Samaran, F., Adam, O., & Guinet, C. (2010). Detection range modeling of blue whale calls in Southwestern Indian Ocean. Applied Acoustics, 71(11), 1099–1106. https://doi.org/10.1016/j.apacoust.2010.05.014

Saoulis, A. A., Loureiro, A., Tsekhmistrenko, M., & Ferreira, A. M. G. (2025). reverb: software. Zenodo. https://doi.org/10.5281/zenodo.17515563

Shakeel, M., Nishida, K., Itoyama, K., & Nakadai, K. (2022). 3d convolution recurrent neural networks for multi-label earthquake magnitude classification. Applied Sciences, 12(4), 2195. https://doi.org/10.3390/app12042195

Sharif Razavian, A., Azizpour, H., Sullivan, J., & Carlsson, S. (2014). CNN features off-the-shelf: an astounding baseline for recognition. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 806–813.

Si, X., Wu, X., Sheng, H., Zhu, J., & Li, Z. (2024). SeisCLIP: A seismology foundation model pre-trained by multimodal data for multipurpose seismic feature extraction. IEEE Transactions on Geoscience and Remote Sensing, 62, 1–13. https://doi.org/10.1109/TGRS.2024.3354456

Širović, A., Hildebrand, J. A., & Wiggins, S. M. (2007). Blue and fin whale call source levels and propagation range in the Southern Ocean. The Journal of the Acoustical Society of America, 122(2), 1208–1215. https://doi.org/10.1121/1.2749452

Širović, A., Hildebrand, J. A., Wiggins, S. M., McDonald, M. A., Moore, S. E., & Thiele, D. (2004). Seasonality of blue and fin whale calls and the influence of sea ice in the Western Antarctic Peninsula. Deep Sea Research Part II: Topical Studies in Oceanography, 51(17–19), 2327–2344. https://doi.org/10.1016/j.dsr2.2004.08.005

Skop, R. A., & Griffin, O. M. (1975). On a theory for the vortex-excited oscillations of flexible cylindrical structures. Journal of Sound and Vibration, 41(3), 263–274. https://doi.org/10.1016/s0022-460x(75)80173-8

Sohn, K., Berthelot, D., Carlini, N., Zhang, Z., Zhang, H., Raffel, C. A., Cubuk, E. D., Kurakin, A., & Li, C.-L. (2020). Fixmatch: Simplifying semi-supervised learning with consistency and confidence. Advances in Neural Information Processing Systems, 33, 596–608.

Stafford, K. M., Nieukirk, S. L., Cox, C. G., & others. (2001). Geographic and seasonal variation of blue whale calls in the North Pacific. J. Cetacean Res. Manage., 3(1), 65–76. https://doi.org/10.47536/jcrm.v3i1.902

Stähler, S. C., Schmidt-Aursch, M. C., Hein, G., & Mars, R. (2018). A Self-Noise Model for the German DEPAS OBS Pool. Seismological Research Letters, 89(5), 1838–1845. https://doi.org/10.1785/0220180056

Stähler, S. C., Sigloch, K., Hosseini, K., Crawford, W. C., Barruol, G., Schmidt-Aursch, M. C., Tsekhmistrenko, M., Scholz, J.-R., Mazzullo, A., & Deen, M. (2016). Performance report of the RHUM-RUM ocean bottom seismometer network around La Réunion, western Indian Ocean. Advances in Geosciences, 41, 43–63. https://doi.org/10.5194/adgeo-41-43-2016

Stepnov, A., Chernykh, V., & Konovalov, A. (2021). The seismo-performer: a novel machine learning approach for general and efficient seismic phase recognition from local earthquakes in real time. Sensors, 21(18), 6290. https://doi.org/10.3390/s21186290

Storchak, D. A., Di Giacomo, D., Bondár, I., Engdahl, E. R., Harris, J., Lee, W. H., Villaseñor, A., & Bormann, P. (2013). Public release of the ISC–GEM global instrumental earthquake catalogue (1900–2009). Seismological Research Letters, 84(5), 810–815. https://doi.org/10.1785/0220130034

Stowell, D. (2022). Computational bioacoustics with deep learning: a review and roadmap. PeerJ, 10, e13152. https://doi.org/10.7717/peerj.13152 Strudel, R., Garcia, R., Laptev, I., & Schmid, C. (2021). Segmenter: Transformer for semantic segmentation. Proceedings of the IEEE/CVF International Conference on Computer Vision, 7262–7272.

Sutton, G. H., & Duennebier, F. K. (1987). Optimum design of ocean bottom seismometers. Marine Geophysical Researches, 9, 47–65. https://doi.org/10.1007/BF00338250

Tajbakhsh, N., Shin, J. Y., Gurudu, S. R., Hurst, R. T., Kendall, C. B., Gotway, M. B., & Liang, J. (2016). Convolutional neural networks for medical image analysis: Full training or fine tuning? IEEE Transactions on Medical Imaging, 35(5), 1299–1312. https://doi.org/10.1109/TMI.2016.2535302

Tan, D., Fee, D., Witsil, A., Girona, T., Haney, M., Wech, A., Waythomas, C., & Lopez, T. (2024). Detection and characterization of seismic and acoustic signals at Pavlof Volcano, Alaska, using deep learning. Journal of Geophysical Research: Solid Earth, 129(6), e2024JB029194. https://doi.org/10.1029/2024JB029194

Tan, T., Godin, O. A., Walters, M. W., & Joseph, J. E. (2025). Physics-informed and machine learning-enabled retrieval of ocean current speed from flow noise. The Journal of the Acoustical Society of America, 157(2), 1084–1096. https://doi.org/10.1121/10.0035800

Tarakanov, R. Y., Morozov, E. G., van Haren, H., Makarenko, N. I., & Demidova, T. A. (2018). Structure of the Deep Spillway in the Western Part of the Romanche Fracture Zone. Journal of Geophysical Research: Oceans, 123(11), 8508–8531. https://doi.org/10.1029/2018jc013961

Tarvainen, A., & Valpola, H. (2017). Mean teachers are better role models: Weight-averaged consistency targets improve semi-supervised deep learning results. Advances in Neural Information Processing Systems, 30.

Terven, J., Córdova-Esparza, D.-M., & Romero-González, J.-A. (2023). A comprehensive review of yolo architectures in computer vision: From yolov1 to yolov8 and yolo-nas. Machine Learning and Knowledge Extraction, 5(4), 1680–1716. https://doi.org/10.3390/make5040083

Tkachenko, M., Malyuk, M., Holmanyuk, A., & Liubimov, N. (2020-2024). Label Studio: Data labeling software. https://github.com/HumanSignal/label-studio

Trabattoni, A., Barruol, G., Dréo, R., & Boudraa, A. (2023). Ship detection and tracking from single ocean-bottom seismic and hydroacoustic stations. The Journal of the Acoustical Society of America, 153(1), 260–273. https://doi.org/10.1121/10.0016810

Trappolini, D., Laurenti, L., Poggiali, G., Tinti, E., Galasso, F., Michelini, A., & Marone, C. (2024). Cold diffusion model for seismic denoising. Journal of Geophysical Research: Machine Learning and Computation, 1(2), e2024JH000179. https://doi.org/10.1029/2024JH000179

Trehu, A. (1985). A note on the effect of bottom currents on an ocean bottom seismometer. Bulletin of the Seismological Society of America, 75(4), 1195–1204. https://doi.org/10.1785/BSSA0750041195

Trehu, A. M. (1985). Coupling of ocean bottom seismometers to sediment: Results of tests with the U.S. Geological Survey ocean bottom seismometer. Bulletin of the Seismological Society of America, 75(1), 271–289. https://doi.org/10.1785/bssa0750010271

Triantafyllou, M. S., Bourguet, R., Dahl, J., & Modarres-Sadeghi, Y. (2016). Vortex-Induced Vibrations. In Springer Handbook of Ocean Engineering (pp. 819–850). Springer International Publishing. https://doi.org/10.1007/978-3-319-16649-0_36

Tsekhmistrenko, M., Ferreira, A. M. G., Miranda, M., Baranbooei, S., Cabieces Diaz, R., Carapuço, M., Corela, C., Duarte, J. L., Ferreira, H., Geissler, W. H., Harris, K., Hicks, S. P., Hosseini, K., Ke, K.-Y., Krüger, F., Lange, D., Loureiro, A., Makus, P., Marignier, A., … Tilmann, F. (2025). Performance of the 2021-2022 UPFLOW large ocean bottom seismometer array in the Azores-Madeira-Canary Islands region, Atlantic Ocean. Seismica. UIDB/50019/2020. (2020). https://doi.org/10.54499/UIDB/50019/2020 UIDP/50019/2020. (2020). https://doi.org/10.54499/UIDP/50019/2020

Valente, R., Correia, A. M., Gil, A., Gonzalez Garcia, L., & Sousa-Pinto, I. (2019). Baleen whales in Macaronesia: occurrence patterns revealed through a bibliographic review. Mammal Review, 49(2), 129–151. https://doi.org/10.1111/mam.12148

Van den Oord, A., Dieleman, S., & Schrauwen, B. (2013). Deep content-based music recommendation. Advances in Neural Information Processing Systems, 26. Van Engelen, J. E., & Hoos, H. H. (2020). A survey on semi-supervised learning. Machine Learning, 109(2), 373–440. https://doi.org/10.1007/s10994-019-05855-6

van Geel, N. C. F., Merchant, N. D., Culloch, R. M., Edwards, E. W. J., Davies, I. M., O’Hara Murray, R. B., & Brookes, K. L. (2020). Exclusion of tidal influence on ambient sound measurements. The Journal of the Acoustical Society of America, 148(2), 701–712. https://doi.org/10.1121/10.0001704

Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A. N., Kaiser, Ł., & Polosukhin, I. (2017). Attention is all you need. Advances in Neural Information Processing Systems, 30.

Venkatesh, S., Moffat, D., & Miranda, E. R. (2022). You only hear once: a YOLO-like algorithm for audio segmentation and sound event detection. Applied Sciences, 12(7), 3293. https://doi.org/10.3390/app12073293

Walter, F., O’Neel, S., McNamara, D., Pfeffer, W., Bassis, J. N., & Fricker, H. A. (2010). Iceberg calving during transition from grounded to floating ice: Columbia Glacier, Alaska. Geophysical Research Letters, 37(15). https://doi.org/10.1029/2010GL043201

Wang, A., Chen, H., Liu, L., Chen, K., Lin, Z., Han, J., & others. (2024). Yolov10: Real-time end-to-end object detection. Advances in Neural Information Processing Systems, 37, 107984–108011.

Wang, T., Bian, Y., Zhang, Y., & Hou, X. (2023). Using artificial intelligence methods to classify different seismic events. Seismological Society of America, 94(1), 1–16. https://doi.org/10.1785/0220220055

Webb, S. C. (1998). Broadband seismology and noise under the ocean. Reviews of Geophysics, 36(1), 105–142. https://doi.org/10.1029/97RG02287

Wei, Y., Liang, X., Chen, Y., Shen, X., Cheng, M.-M., Feng, J., Zhao, Y., & Yan, S. (2016). Stc: A simple to complex framework for weakly-supervised semantic segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(11), 2314–2320. https://doi.org/10.1109/TPAMI.2016.2636150

Wilcock, W. S. (2012). Tracking fin whales in the northeast Pacific Ocean with a seafloor seismic network. The Journal of the Acoustical Society of America, 132(4), 2408–2419. https://doi.org/10.1121/1.4747017

Wilcock, W. S., & Hilmo, R. S. (2021). A method for tracking blue whales (Balaenoptera musculus) with a widely spaced network of ocean bottom seismometers. Plos One, 16(12), e0260273. https://doi.org/10.1371/journal.pone.0260273

Woollam, J., Münchmeyer, J., Tilmann, F., Rietbrock, A., Lange, D., Bornstein, T., Diehl, T., Giunchi, C., Haslinger, F., Jozinović, D., & others. (2022). SeisBench—A toolbox for machine learning in seismology. Seismological Society of America, 93(3), 1695–1709. https://doi.org/10.1785/0220210324

Wu, Y., Yang, T., Liu, D., Dai, Y., & An, C. (2023). Current-induced noise in ocean bottom seismic data: Insights from a laboratory water flume experiment. Earth and Space Science, 10(6), e2022EA002531. https://doi.org/10.1029/2022EA002531

Xi, Z., Wei, S. S., Zhu, W., Beroza, G. C., Jie, Y., & Saloor, N. (2024). Deep Learning for Deep Earthquakes: Insights from OBS Observations of the Tonga Subduction Zone. Geophysical Journal International, 238(2), 1073–1088. https://doi.org/10.1093/gji/ggae200

Xie, E., Wang, W., Yu, Z., Anandkumar, A., Alvarez, J. M., & Luo, P. (2021). SegFormer: Simple and efficient design for semantic segmentation with transformers. Advances in Neural Information Processing Systems, 34, 12077–12090.

Yang, X., Song, Z., King, I., & Xu, Z. (2022). A survey on deep semi-supervised learning. IEEE Transactions on Knowledge and Data Engineering, 35(9), 8934–8954. https://doi.org/10.1109/TKDE.2022.3220219

Yosinski, J., Clune, J., Bengio, Y., & Lipson, H. (2014). How transferable are features in deep neural networks? Advances in Neural Information Processing Systems, 27. Yu, S., Ma, J., & Wang, W. (2019). Deep learning for denoising. Geophysics, 84(6), V333–V350. https://doi.org/10.1190/geo2018-0668.1

Yu, X., Wang, J., Zhao, Y., & Gao, Y. (2023). Mix-ViT: Mixing attentive vision transformer for ultra-fine-grained visual categorization. Pattern Recognition, 135, 109131. https://doi.org/10.1016/j.patcog.2022.109131

Zali, Z., Rein, T., Krüger, F., Ohrnberger, M., & Scherbaum, F. (2023). Ocean bottom seismometer (OBS) noise reduction from horizontal and vertical components using harmonic–percussive separation algorithms. Solid Earth, 14(2), 181–195. https://doi.org/10.5194/se-14-181-2023

Zhai, X., Kolesnikov, A., Houlsby, N., & Beyer, L. (2022). Scaling vision transformers. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 12104–12113.

Zhong, Y., & Tan, Y. J. (2024). Deep-Learning-Based Phase Picking for Volcano-Tectonic and Long-Period Earthquakes. Geophysical Research Letters, 51(12), e2024GL108438. https://doi.org/10.1029/2024GL108438

Zhou, T., Zhang, F., Chang, B., Wang, W., Yuan, Y., Konukoglu, E., & Cremers, D. (2024). Image Segmentation in Foundation Model Era: A Survey. CoRR. Zhou, Z., Rahman Siddiquee, M. M., Tajbakhsh, N., & Liang, J. (2018). Unet++: A nested u-net architecture for medical image segmentation. Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support: 4th International Workshop, DLMIA 2018, and 8th International Workshop, ML-CDS 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 20, 2018, Proceedings 4, 3–11. Zhou, Z.-H. (2017). A brief introduction to weakly supervised learning. National Science Review, 5(1), 44–53. https://doi.org/10.1093/nsr/nwx106

Zhu, J., Fang, L., Miao, F., Fan, L., Zhang, J., & Li, Z. (2023). Deep learning and transfer learning of earthquake and quarry-blast discrimination: applications to southern california and eastern kentucky. Geophysical Journal International, 236(2), 979–993. https://doi.org/10.1093/gji/ggad463

Zhu, W., & Beroza, G. C. (2018). PhaseNet: a deep-neural-network-based seismic arrival-time picking method. Geophysical Journal International, 216(1), 261–273. https://doi.org/10.1093/gji/ggy423

Zhu, W., Mousavi, S. M., & Beroza, G. C. (2019). Seismic signal denoising and decomposition using deep neural networks. IEEE Transactions on Geoscience and Remote Sensing, 57(11), 9476–9488. https://doi.org/10.1109/TGRS.2019.2926772

Zou, Z., Chen, K., Shi, Z., Guo, Y., & Ye, J. (2023). Object detection in 20 years: A survey. Proceedings of the IEEE, 111(3), 257–276. https://doi.org/10.1109/JPROC.2023.3238524

Downloads

Published

2026-02-24

How to Cite

Saoulis, A., Loureiro, A., Tsekhmistrenko, M., & Ferreira, A. (2026). Semantic segmentation for feature detection in ocean bottom seismometer data. Seismica, 5(1). https://doi.org/10.26443/seismica.v5i1.1821

Issue

Section

Articles